Full list on Google Scholar.
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Replication fork directionality reveals how structural variants arise under replication stress. Dominik Glodzik, Mathilda Rigby, Michail Andreopoulos, Jake Crawford, Shannon Ehmsen, Avraam Tapinos, Alex Cornish, Richard Houlston, David C. Wedge, Ralph Scully, Peter J. Park. bioRxiv preprint, 2026. DOI
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Benchmarking of duplex sequencing approaches to reveal somatic mutation landscapes. Yang Zhang, Vinayak V. Viswanadham, Michail Andreopoulos, Dominik Glodzik, Ruolin Liu, Lovelace J. Luquette, et al. (SMaHT Duplex Sequencing Focus Group). bioRxiv preprint, 2025. DOI
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Timing the onset of homologous recombination deficiency before cancer diagnosis. Michail Andreopoulos, Muchun Niu, Yang Zhang, Vinayak V. Viswanadham, Doga C. Gulhan, Hu Jin, Felipe Batalini, Gerburg Wulf, Chenghang Zong, Peter J. Park, Dominik Glodzik. bioRxiv preprint, 2025. DOI
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Chromoscope: interactive multiscale visualization for structural variation in human genomes. Sehi L’Yi, Dominika Maziec, Victoria Stevens, Trevor Manz, Alexander Veit, Michele Berselli, Peter J. Park, Dominik Głodzik, Nils Gehlenborg. Nature Methods, 2023. DOI · Website
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Mutational mechanisms of amplifications revealed by analysis of clustered rearrangements in breast cancers. Dominik Głodzik, Colin Purdie, Inga H. Rye, Peter T. Simpson, Johan Staaf, Paul N. Span, Hege G. Russnes, Serena Nik-Zainal. Annals of Oncology 29(11), 2223–2231, 2018. DOI
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HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures. Helen Davies, Dominik Glodzik, Sandro Morganella, Lucy R. Yates, Johan Staaf, Xueqing Zou, Manasa Ramakrishna, Sancha Martin, Sandrine Boyault, Anieta M. Sieuwerts, Peter T. Simpson, Tari A. King, Keiran Raine, Jorunn E. Eyfjord, Gu Kong, Åke Borg, Ewan Birney, Hendrik G. Stunnenberg, Marc J. van de Vijver, Anne-Lise Børresen-Dale, John W. M. Martens, Paul N. Span, Sunil R. Lakhani, Anne Vincent-Salomon, Christos Sotiriou, Andrew Tutt, Alastair M. Thompson, Steven Van Laere, Andrea L. Richardson, Alain Viari, Peter J. Campbell, Michael R. Stratton, Serena Nik-Zainal. Nature Medicine, 2017. DOI
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A somatic-mutational process recurrently duplicates germline susceptibility loci and tissue-specific super-enhancers in breast cancers. Dominik Glodzik, Sandro Morganella, Helen Davies, Peter T. Simpson, Yilong Li, Xueqing Zou, Javier Diez-Perez, Johan Staaf, Ludmil B. Alexandrov, Marcel Smid, Arie B. Brinkman, Inga Hansine Rye, Hege Russnes, Keiran Raine, Colin A. Purdie, Sunil R. Lakhani, Alastair M. Thompson, Ewan Birney, Hendrik G. Stunnenberg, Marc J. van de Vijver, John W. M. Martens, Anne-Lise Børresen-Dale, Andrea L. Richardson, Gu Kong, Alain Viari, Douglas Easton, Gerard Evan, Peter J. Campbell, Michael R. Stratton, Serena Nik-Zainal. Nature Genetics 49(3), 341–348, 2017. DOI